SNP Profiles of RB 37 [BRA]   View Data

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 Key

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_Input profile
AACCCCCCAATTGGTTAAGGCTAACCAA
1._RB_37_[BRA]
AACCCTCCAATTGGTTAAGGCTAACCAA
2._RUQ_1705
_CC____GG__GG_AA__
3._RUQ_135
AGCCCCCCAATTGGCTAAGGCTAACCAA
4._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
5._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
6._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
7._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
8._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
9._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
10._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
11._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
12._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
13._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
14._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
15._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
16._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
17._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
18._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
19._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
20._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
21._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
22._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
23._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
24._RB_37_[BRA]
AACCCCCTAATTGGCTAAGGCCAACCAA
25._GC-01-043-2-20
AACCCCCTAATTGGCTAAGGCCAACCAA
26._GC-01-43-2-20
AAGGGGAGAAAACC_AAGGGGAAGGAA
27._GC-01-43-2-20
AAGGGGAG_AACC_AAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
CGCTTTGGGGAACCCCGGCCACGGAACT
1._RB_37_[BRA]
CGCTTTGGGGAACCCCGGCCAC_AACT
2._RUQ_1705
___GGGGAA_CCGG_AA___
3._RUQ_135
CGCTCTGGGGAACCCCGGCCACGGAACT
4._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
5._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
6._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
7._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
8._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
9._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
10._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
11._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
12._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
13._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
14._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
15._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
16._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
17._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
18._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
19._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
20._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
21._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
22._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAACC
23._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAACC
24._RB_37_[BRA]
GGTTTTGGGGAACCACGGCCCCGGAATT
25._GC-01-043-2-20
GGTTTTGGGGAACCACGGCCCCGGAATT
26._GC-01-43-2-20
GGAAAACCCC_GGACCG_CCGGAAAA
27._GC-01-43-2-20
GGAAAACCCC_GGACCG_CCGGAAAA
 29303132333435       
_Input profile
AACCCCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
1._RB_37_[BRA]
AACC_GGACAAGGX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1705
AA___AC__X_XX_XX_XX_XX_XX_XX_X
3._RUQ_135
AACCCCGGACAAGGX_XX_XX_XX_XX_XX_XX_X
4._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
6._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
7._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
8._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
9._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
10._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
11._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
12._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
13._GC-01-043-2-20
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
14._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
15._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
16._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
17._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
18._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
19._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
20._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
21._RB_37_[BRA]
AACCTTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
22._GC-01-043-2-20
AA_TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
23._RB_37_[BRA]
AA_TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
24._RB_37_[BRA]
AA_TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
25._GC-01-043-2-20
AA_TTGGCCAAGGX_XX_XX_XX_XX_XX_XX_X
26._GC-01-43-2-20
AACCAACCCCAAGGX_XX_XX_XX_XX_XX_XX_X
27._GC-01-43-2-20
AACCAACCCCAAGGX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_37_[BRA]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._RB_37_[BRA]

98.5 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_37_[BRA] RUQ_1705

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._RB_37_[BRA] RUQ_135

95.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

5._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._RB_37_[BRA] GC-01-043-2-20

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

16._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

17._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

18._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

19._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

20._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

21._RB_37_[BRA]

84.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

22._RB_37_[BRA] GC-01-043-2-20

83.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._RB_37_[BRA]

83.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

24._RB_37_[BRA]

83.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

25._RB_37_[BRA] GC-01-043-2-20

83.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._RB_37_[BRA] GC-01-43-2-20

45.3 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

43.5 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP534 25TcSNP529
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25